Downloading public data
Command line interface
- Basespace download
- Help with git
- Shell script loops
- Transferring scATAC data / ssh tunneling
- Useful bash commands
Bioinformatics, R, Python
- Align and quantify reads
- Annotate SNPs in hg19
- Mitochondria / Nuclear Reads splitting
- Help for developing in Snakemake
- Useful R commands and syntax